Publications

*denotes student author

114. Jordan, D., J.S. Kominoski, S. Servais, D. Mills. Salinity Impacts the functional mcrA and dsrA gene abundances in Everglades marshes. Microorganisms (in review).

113. Hale, R., K. Hopkins, K. Capps, J.S. Kominoski, J. Morse, A, Roy, S. Chen, A. Quick, A. Blinn*, L. Ortiz Muñoz*, G. Folk*. A macroscale framework for understanding urban watershed heterogeneity. Frontiers in Ecology and the Environment (in review).

112. Smith, M.A., J.S. Kominoski, O. Barbosa, E. Cook, S. Elser, N.B. Grimm, J. Morse, J. Sauer. Dissolved organic matter composition and nutrient stoichiometry mediate nutrient uptake in urban wetlands. Ecosphere (in revision).

111. *Bumpers, P., A.D. Rosemond, D.W. Manning, J.S. Kominoski, J.P. Benstead, L. Demi. Experimental nutrient enrichment of forest streams reduces ecosystem nitrogen and phosphorus storage. Limnology and Oceanography (in revision).

110. Nocentini, A., J. Redwine, E.E. Gaiser, T. Hill, S. Hoffman, J.S. Kominoski, J. Sah, D. Shinde, D. Surratt. Rehydration of degraded wetlands: understanding drivers of alternate states and persistent regime shifts in vegetation. Ecosphere (in revision).

109. Julian, P., J. Fourqueran, S.E. Davis, D. Surratt, E.E. Gaiser, J.S. Kominoski, T.G. Troxler, J. Boyer, S.E. Thomas, H. Briceño, C.J. Madden, E. Montes, C. Keible. Long-term spatiotemporal patterns and trends in water quality reveal a coastal continuum of disturbance legacies. Limnology and Oceanography (in review).

108. Doi, H., J.S. Kominoski. I. Katano. Quantifying habitable water temperatures and thermal sensitivities among species functional traits of stream invertebrates. Oikos (in review).

107. *Anderson, K.J., J.S. Kominoski, A. Nocentini, S. Hoffman. Dissolved organic matter in peat and marl marshes vary with nutrient enrichment and restored hydrology. Restoration Ecology (in press). https://doi.org/10.1111/rec.13905

106. *Smith, M.A., J.S. Kominoski, R. Price, O. Abdul-Aziz, T.G. Troxler. Linking seasonal changes in organic matter composition and nutrients to shifting hydraulic gradients in coastal urban canals. Water Resources Research (in press).

105. *Tomczyk, N., A.D. Rosemond, J.S. Kominoski, D.W.P. Manning, J.P. Benstead, V. Gulis, S. Thomas, E.R. Hotchkiss, A.M. Helton. Nitrogen and phosphorus uptake stoichiometry tracks experimental nutrient supply during a two-year whole-ecosystem experiment. Ecosystems (in press).

104. Zhao, J., S..Chakrabarti, R. Chambers, P. Weisenhorn, R. Travieso, S. Stumpf, E. Standen, H. Briceño, T. Troxler, E.E. Gaiser, J.S. Kominoski, B. Dhillon, W. Martens-Habbena. Year-around survey and manipulation experiments reveal differential sensitivities of soil prokaryotic and fungal communities to saltwater intrusion in Florida Everglades wetlands. Science of the Total Environment (in press).

103. *Leyva, D., R. Jafffé, J. Courson*, J.S. Kominoski, M. Usman Tariq, F, Saeed, F. Fernandez-Lima. Molecular level characterization of DOM along a freshwater-to-estuarine coastal gradient in the Florida Everglades. Aquatic Sciences (in press).

102. Patrick, C.J., E. Hensel, J.S. Kominoski, B.A. Stauffer, W.H. McDowell. From reactive to proactive: understanding extreme events requires a new funding mode. Frontiers in Ecology and the Environment (in press).

101. Halpern, B. et al. Priorities for synthesis in ecology and environmental science. Ecosphere (in press).

100. *Kammann, S., D. Saavedra Hortua*, J.S. Kominoski, T. Fett*, L. Gillis. Understanding how nutrient limitation and plant traits influence blue carbon storage potential in mangrove-seagrass coastal ecosystems. Limnology and Oceanography (in press).

99. Bertuzzo, E., E.R. Hotchkiss, A. Argerich, J.S. Kominoski, D. Oviedo-Vargas, P. Savoy, R. Scarlett*, D. von Schiller, J.B. Heffernan. Respiration regimes in rivers: Partitioning source-specific respiration from metabolism time series. Limnology and Oceanography (in press).

98. Schuman, J. K., J. K. Balch, R. T. Barnes, P. E. Higuera, C. I. Roos, D. W. Schwilk, E. N. Stavros, Tirtha Banerjee, M. M. Bela, J. Bendix, S. Bertolino, S. Bililign, K. D. Bladon, P. Brando, R. E. Breidenthal, B. Buma, D. Calhoun, L. M. V. Carvalho, M. E. Cattau, K. M. Cawley, S. Chandra, M. L. Chipman, J. Cobian-Iñiguez, E. Conlisk, J. D. Coop, A. Cullen, K. T. Davis, A. Dayalu, F. De Sales, M. Dolman, L. M. Ellsworth, S. Franklin, C. H. Guiterman, M. Hamilton, E. J. Hanan, W. D. Hansen, S. Hantson, B. J. Harvey, A. Holz, T. Huang, M. D. Hurteau, N. T. Ilangakoon, M. Jennings, C. Jones, A. Klimaszewski-Patterson, L. N. Kobziar, J. S. Kominoski, B. Kosovic, M. A. Krawchuk, P. Laris, J. Leonard, S. M. Loria-Salazar, M. Lucash, H. Mahmoud, E. Margolis, T. Maxwell, J. L. McCarty, D. B. McWethy, R. S. Meyer, J. R. Miesel, W. K. Moser, R. C. Nagy, D. Niyogi, H. M. Palmer, A. Pellegrini, B. Poulter, K. Robertson, A. V. Rocha, M. Sadegh, F. Santos, F. Scordo, J. O. Sexton, A. S. Sharma, A. M. S. Smith, A. J. Soja, C. Still, T. Swetnam, A. D. Syphard, M. W. Tingey, A. Tohidi, A. T. Trugman, M. Turetsky, J. M. Varner, Y. Wang, T. Whitman, S. Yelenik, X. Zhang. 2022. Reimagine fire science for the Anthropocene. PNAS Nexus pgac115. https://doi.org/10.1093/pnasnexus/pgac115

97. Nocentini, A., J.S. Kominoski, J.J. O’Brien, J. Redwine. Fire intensity and ecosystem oligotrophic status drive relative phosphorus release in subtropical freshwater marshes of Everglades National Park, USA. Ecosphere (in press).

96. Ishtiaq, K., T.G. Troxler, L. Lamb-Wotton*, B.J. Wilson, S.P. Charles, S.E. Davis, J.S. Kominoski, D.T. Rudnick, F.H. Sklar. 2022. Modeling net ecosystem carbon balance and loss in coastal wetlands exposed to sea-level rise and saltwater intrusion. Ecological Applications. https://doi.org/10.1002/eap.2702

95. Reed, D.C., R.J. Schmitt, A.B. Burd, D.E. Burkepile, J.S. Kominoski, K.J. McGlathery, R.J. Miller, J.T. Morris, J.C. Zinnert. Responses of coastal ecosystems to climate change: insights from long-term ecological research. BioScience (in press).

94. Gaiser, E.E., J.S. Kominoski, D.M. McKnight, C.A. Bahlai, C. Cheng, S. Record, W. Wollheim, K.R. Christianson, M.R. Downs, P.A. Hawman, S.J. Holbrook, A. Kumar, D.R. Mishra, N.P. Molotch, R.B. Primack, A. Rassweiler, R.J. Schmitt, L. Sutter. 2022. Long-term ecological researchand the COVID-19 anthropause: A window to understanding social-ecological disturbance. Ecosphere 13:e4019. https://doi.org/10.1002/ecs2.4019

93. Laas, P., K. Ugarelli, R. Travieso, S. Stumpf, E. Gaiser, J.S. Kominoski, U. Stingl. 2022. Water column microbial communities vary along salinity gradients in the Florida Coastal Everglades wetlands. Microorganisms 10:215. https://doi.org/10.3390/microorganisms10020215

92. *Peng, D., D. Montelongo*, L. Wu*, A. Armitage, J.S. Kominoski, S.C. Pennings. 2022. Ahurricane alters the relationship between mangrove cover and marine subsidies. Ecology 103:e3662.  https://doi.org/10.1002/ecy.3662

91. Kominoski, J.S., M. Fernandez*, P. Breault*, V. Sclater, B.B. Rothermel. 2022. Water availability drives post-fire nutrient cycling and plant community recovery in intermittent wetlands. Ecosystems 25:265-278. https://doi.org/10.1007/s10021-021-00653-5

90. Malone, S. L., J. Zhao, J. S. Kominoski, G. Starr, C. L. Staudhammer, P. C. Olivas, J. C. Cummings, and S. F. Oberbauer. 2022. Integrating aquatic metabolism and net ecosystem CO₂ balance in calcareous short- and long-hydroperiod subtropical freshwater wetlands. Ecosystems 25:567-585. https://doi.org/10.1007/s10021-021-00672-2

89. Kominoski, J.S., C.A. Weaver, A.R. Armitage, S.C. Pennings. 2022. Coastal carbon processing rates increase with mangrove cover following a hurricane in Texas, USA. Ecosphere 13:e4007. https://doi.org/10.1002/ecs2.4007

88. Patrick, C.J., J.S. Kominoski, W.H. McDowell, B. Branoff, D. Lagomasino, M. Leon, E. Hensel, M. J. S. Hensel, B.A. Strickland, T.M. Aide, A.R. Armitage, M. Campos-Cerqueira, V.M. Congdon, T.A. Crowl, D.J. Devlin, S. Douglas, B.E. Erisman, R.A. Feagin, S.J. Geist, N.S. Hall, A.K. Hardison, M.R. Heithaus, J.A. Hogan*, J.D. Hogan, S. Kinard, J.J. Kiszka, T-C Lin, K. Lu, C.J. Madden, P.A. Montagna, C.S. O’Connell, C.E. Proffitt, B.K. Reese, J.W. Reustle, K.L. Robinson, S.A. Rush, R.O. Santos, A. Schnetzer, D.L. Smee, R.S. Smith, G. Starr, B.A. Stauffer, L.M. Walker, C.A. Weaver, M.S. Wetz, E.R. Whitman, S.S. Wilson, J. Xue, X. Zou. 2022. A general pattern of trade-offs between ecosystem resistance and resilience to tropical cyclones. Science Advances 8:eabl9155. DOI: 10.1126/sciadv.abl9155

87. Harms, T.K., P.M. Groffman, L. Aluwihare, C. Craft, W.R. Wieder, S.E. Hobbie, S.G. Baer, J.M. Blair, S. Frey, C.K. Remucal, J.A. Rudgers, S.L. Collins, J.S. Kominoski, B.A. Ball et al., 2021. Patterns and trends of organic matter processing and transport: insights from the US Long Term Ecological Research Network. Climate Change Ecology 2:100025. https://doi.org/10.1016/j.ecochg.2021.100025

86. St Mary, C., T. Powell, J.S. Kominoski, E. Weinert. 2021. Rescaling biology: A call for integration across subdisciplinary scales for enhanced understanding and prediction. Integrative and Comparative Biology 61:2031-2037. https://doi.org/10.1093/icb/icab191

85. Lee, D.Y., J.S. Kominoski, M. Kline, M. Robinson, S. Roebling. 2021. Saltwater legacies reduce net ecosystem carbon storage despite freshwater restoration: insights from experimental wetlands. Restoration Ecology e13524. https://doi.org/10.1111/rec.13524

84. Kominoski, J.S., J. Pachόn*, J. Brock, C. McVoy, S.L. Malone. Understanding drivers of aquatic ecosystem metabolism in freshwater subtropical ridge and slough wetlands. Ecosphere 12:e03849. https://doi.org/10.1002/ecs2.3849

83. *Smith, M.A., J.S. Kominoski, E.E. Gaiser, R.M. Price, T.G. Troxler. 2021. Stormwater runoff and tidal flooding transform dissolved organic matter composition and increase bioavailability in urban coastal ecosystems. Journal of Geophysical Research: Biogeosciences 126: e2020JG006146. https://doi.org/10.1029/2020JG006146

82. *Servais, S. J.S. Kominoski, M. Fernandez*, K. Morales*. 2021. Saltwater and phosphorus drive unique soil biogeochemical processes in freshwater and brackish wetland mesocosms. Ecosphere 12:e03704. https://doi.org/10.1002/ecs2.3704

81. *Kuhn, A.L., J.S. Kominoski, A.R. Armitage, S.P. Charles, S.C. Pennings, C.A. Weaver, T.R. Maddox. 2021. Buried hurricane legacies: elevated sulfide and decreased root biomass in coastal wetlands. Ecosphere 12:e03674.  https://doi.org/10.1002/ecs2.3674

80. Nocentini, A., J. S. Kominoski, J. Sah, J. Redwine, M. Gue, I. Wilson- Navarro, and A. Gil. 2021. Prescribed Fires inside Everglades National Park (Florida, United States). Bulletin of the Ecological Society of America 102:e01872. https://doi.org/10.1002/bes2.1872

79. Nocentini, A., J.S. Kominoski, J.P. Sah, J. Redwine, M. Gue, I. Wilson‐Navarro, and A. Gil. 2021. Prescribed Fires inside Everglades National Park (Florida, United States). The Bulletin of the Ecological Society of America 102:e01872. https://doi.org/10.1002/bes2.1872

78. Meeder, J., R. Parkinson, D. Ogurcak, M. Ross, J.S. Kominoski. 2021. Changes in sediment organic carbon accumulation under conditions of historical sea-level rise, Southeast Saline Everglades, Florida, U.S.A. Wetlands 41:1-12. https://doi.org/10.1007/s13157-021-01440-7

77. Pennings, S.C., R. Glazner, Z. Hughes, J.S. Kominoski, A.R. Armitage. 2021. Effects of mangrove cover on coastal erosion during a hurricane in Texas, USA. Ecology 102: e03309. https://doi.org/10.1002/ecy.3309

76. Nocentini, A., J.S. Kominoski, J.P. Sah. 2021. Comparing biogeochemical legacies of fire in shorter- and longer-hydroperiod wetlands with different soil types. Ecosphere 12:e03408. https://doi.org/10.1002/ecs2.3408

75. Ardón, M., L.H. Zeglin, R.M. Utz, S.D. Cooper, W.K. Dodds, R.J. Bixby, A. Burdett, J.J. Follstad Shah, N.A. Griffiths, T.K. Harms, L.T. Johnson, S.L. Johnson, J. Jones, J.S. Kominoski, W.H. McDowell, A.D. Rosemond, M.T. Trentman, D. Van Horn, A. Ward. 2021. Experimental nitrogen and phosphorus enrichment stimulates multiple trophic levels of algal and detrital-based food webs: A global meta-analysis from streams and rivers. Biological Reviews 96:692-715. https://doi.org/10.1111/brv.12673

74. Zeller, M.A., B.R. Van Dam, C. Lopes*, J.S. Kominoski. 2020. Carbonate-associated organic matter is a putative FDOM source in a subtropical seagrass meadow. Frontiers in Marine Science 7:580284. 10.3389/fmars.2020.580284

73. *Sarker, S.K., J.S. Kominoski, E.E. Gaiser, L.J. Scinto, D.T. Rudnick. 2020. Quantifying effects of increased hydroperiod on wetland nutrient concentrations during early phases of freshwater restoration of the Florida Everglades. Restoration Ecology 28:1561-1573. https://doi.org/10.1111/rec.13231

72. *Hogan, J.A., R.A. Feagin, G. Starr, M. Ross, T.-C. Lin, C. O’Connell, B.A. Stauffer, K.L. Robinson, M. Chapela Lara, J. Xue, B. Kiel Reese, S.J. Geist, E.R. Whitman, S. Douglas, V.M. Congdon, J.W. Reustle, R.S. Smith, D. Lagomasino, B.A. Strickland, S.S. Wilson, E.C. Proffitt, D.J. Hogan, B.L. Branhoff, A.R. Armitage, S.A. Rush, R.O. Santos, M Campos-Cerqueira, P.A. Montagna, B. Erisman, L. Walker, W.L. Silver, T.A. Crowl, M. Wetz, N. Hall, X. Zou, S.C. Pennings, L.-J. Wang, C.-T. Chang, M. Leon, W.H. McDowell, J.S. Kominoski, C.J. Patrick. 2020. A research framework to investigate ecosystem responses to tropical cyclones. BioScience 70:477-489. https://doi.org/10.1093/biosci/biaa034

71. *Manning, D.W.P., A.D. Rosemond, J.P. Benstead, P.K. Bumpers*, J.S. Kominoski. 2020. Transport of N and P in U.S. streams and rivers differs with land use and between dissolved and particulate forms. Ecological Applications 30:e02130. https://doi.org/10.1002/eap.2130

70. *Servais, S., J.S. Kominoski, C. Coronado-Molina, L. Bauman, B.J. Wilson*, V. Mazzei*, S.E. Davis, E.E. Gaiser, S. Kelly, C.J. Madden, D.T. Rudnick, F. Santa Maria, J. Stachelek, F. Sklar, T.G. Troxler. 2020. Effects of saltwater pulses on soil microbial enzymes and organic matter breakdown in freshwater and brackish coastal wetlands. Estuaries and Coasts 43:814-830. https://doi.org/10.1007/s12237-020-00708-1

69. Castañeda-Moya, E., V.H. Rivera-Monroy, R.M. Chambers, X. Zhao, L. Lamb-Wotton*, A. Gorsky, E.E. Gaiser, T.G. Troxler, J.S. Kominoski, M. Hiatt. 2020. Hurricanes fertilize mangrove forests in the Gulf of Mexico (Florida Everglades, USA). Proceedings of the National Academies of Science, USA 117:4831-4841. https://doi.org/10.1073/pnas.1908597117

68. Kominoski, J.S., E.E. Gaiser, E. Castañeda-Moya, S.E. Davis, S. Dessu, P. Julian II*, D.Y. Lee, L. Marazzi, V.H. Rivera-Monroy, A. Sola*, U. Stingl, S. Stumpf, D. Surratt, R. Travieso, and T.G. Troxler. 2020. Disturbance legacies increase and synchronize nutrient concentrations and bacterial productivity in coastal ecosystems. Ecology 101:e02988. https://doi.org/10.1002/ecy.2988

67. Gaiser, E.E., D.M. Bell, M.C.N. Castorani, D.L. Childers, P.M. Groffman, R.C. Jackson, J.S. Kominoski, D.P.C. Peters, S.T.A. Pickett, J. Ripplinger, & J.C. Zinnert. 2020. Long-term ecological research and evolving frameworks of disturbance ecology. BioScience 70:141-156. https://doi.org/10.1093/biosci/biz162

66. Patrick, C.J., Yeager, L., Armitage, A.R., Carvallo, F., Congdon, V., Dunton, K.H., Fisher, M., Hardison, A., Hogan, J., Hosen, J., Hu, X., Kiel Reese, B., Kinard, S., Kominoski, J.S., Lin, X., Liu, Z., Montagna, P.A., Pennings, S.C., Walker, L., Weaver, C.A., Wetz, M. 2020. A system level analysis of coastal ecosystem responses to hurricane impacts. Estuaries and Coasts 43:943-959. DOI 10.1007/s12237-019-00690-3

65. *Mazzei, V., B.J. Wilson*, S.M. Servais*, S.P. Charles*, J.S. Kominoski, E.E. Gaiser. 2020. Periphyton as an indicator of saltwater intrusion into freshwater wetlands: insights from experimental mesocosms. Ecological Applications 30:e02067. https://doi.org/10.1002/eap.2067

64. *Charles, S.P., J.S. Kominoski, A.R. Armitage, H. Guo, C. Weaver*, and S.C. Pennings. 2020. Quantifying how changing mangrove cover affects ecosystem carbon storage in coastal wetlands. Ecology e02916. https://doi.org/10.1002/ecy.2916

63. Dessu, S., R. Price, J.S. Kominoski, S. E. Davis, A. Wymore, W. McDowell, E. E. Gaiser. 2020. Percentile-Range Indexed Mapping and Evaluation (PRIME): a new tool for long term data discovery and application. Environmental Modelling and Software 124: 104580. https://doi.org/10.1016/j.envsoft.2019.104580

62. *Charles, S.P., J.S. Kominoski, T. Troxler, E.E. Gaiser, S. Servais*, B.J. Wilson*, S.E. Davis, F.H. Sklar, C. Coronado-Molina, C.J. Madden, S.P. Kelly and D.T. Rudnick. 2019. Experimental saltwater intrusion drives rapid soil elevation and carbon loss in freshwater and brackish Everglades marshes. Estuaries and Coasts 42:1868-1881. DOI: 10.1007/s12237-019-00620-3

61. LeRoy, C.J., A.L. Hipp, K. Lueders, J.J. Follstad Shah, J.S. Kominoski, M. Ardón, W.K. Dodds, M.O. Gessner, N.A. Griffiths, A. Lecerf, D.W.P. Manning*, R.L Sinsabaugh, J.R. Webster. 2019. Plant phylogenetic history explains ecosystem processing at a global scale. Journal of Ecology 108:17-35. https://doi.org/10.1111/1365-2745.13262

60. Armitage, A. R., C. A. Weaver, J. S. Kominoski, and S. C. Pennings. 2019. Resistance to hurricane effects varies among wetland vegetation types in the marsh-mangrove ecotone. Estuaries and Coasts 43:960-970. https://doi.org/10.1007/s12237-019-00577-3

59. Breithaupt, J., N. Hurst, H.E. Steinmuller, E. Duga, J.M. Smoak, J.S. Kominoski, L.G. Chambers. 2019. Comparing the Biogeochemistry of Storm Surge Sediments and Pre-Storm Soils in Coastal Wetlands: Hurricane Irma and the Florida Everglades. Estuaries and Coasts 43:1090-1103. https://doi.org/10.1007/s12237-019-00607-0

58. *Wilson, B.J., S.M. Servais*, S.P. Charles*, V. Mazzei*, E.E. Gaiser, J.S. Kominoski, J.H. Richards, and T.G. Troxler. 2019. Phosphorus alleviation of salinity stress: effects of saltwater intrusion on an Everglades freshwater peat marsh. Ecology 100:e02672. https://doi.org/10.1002/ecy.2672

57. Tully, K., K. Gedan, A. Strong, E. Bernhardt, T. BenDor, M. Mitchell, J.S. Kominoski, T. Jordan, S. Neubauer, N. Weston. 2019. The invisible flood: the chemistry, ecology, and consequences of saltwater intrusion. BioScience 69:368-378. https://doi.org/10.1093/biosci/biz027

56. *Servais, S.M., J.S. Kominoski, S.P. Charles*, E.E. Gaiser, V. Mazzei*, T.G. Troxler, B.J. Wilson*. 2019. Saltwater intrusion and soil carbon loss: Testing effects of salinity and phosphorus loading on microbial functions in experimental freshwater wetlands. Geoderma 337:1291-1300. https://doi.org/10.1016/j.geoderma.2018.11.013

55. *Servais, S.M., J.S. Kominoski, S.E. Davis, E.E. Gaiser, J. Pachόn*, and T.G. Troxler. 2019. Testing nutrient-limitation effects on disturbance recovery in experimental mangrove wetlands. Wetlands 39:337-347. https://doi.org/10.1007/s13157-018-1100-z

54. Troxler, T.G., G. Starr, J.N. Boyer, J.D. Fuentes, R. Jaffe, S. Malone, J. Barr, S. Davis, L. Collado-Vides, J. Breithaupt*, A. Saha, R. Chambers, C. Madden, J.D. Smoak, J. Fourqurean, G. Koch, J.S. Kominoski, L. Scinto, S. Oberbauer, V. Rivera-Monroy, E. Castaneda, N. Schulte*, S.P. Charles*, J. Richards, D. Rudnick, and K. Whelan. 2019. Carbon Cycles in the Florida Coastal Everglades Social-Ecological System Across Scales. In D.L. Childers, E.E. Gaiser, and L. Ogden (Eds). The Coastal Everglades: The Dynamics of Social-Ecological Transformation in the South Florida Landscape. Oxford University Press.

53. Kominoski, J.S., J. Rehage, W. Anderson, R. Boecek*, H. Briceño, M. Bush*, T. Dreschel, M. Heithaus, R. Jaffé, L. Larsen, P. Matich, C. McVoy, A. Rosenblatt, and T. Troxler.  2019.  Ecosystem Fragmentation and Connectivity – Legacies and Future Implications of a Restored Everglades. In D.L. Childers, E.E. Gaiser, and L. Ogden (Eds). The Coastal Everglades: The Dynamics of Social-Ecological Transformation in the South Florida Landscape. Oxford University Press.

52. *Wilson, B.J., S.M. Servais*, V. Mazzei*. L. Bauman, S.E. Davis, E.E. Gaiser, S. Kelly, J.S. Kominoski, C.J. Madden, J.H. Richards, D. Rudnick, F. Sklar, J. Stachelek, T.G. Troxler. 2018. Salinity pulses interact with seasonal dry-down to increase ecosystem carbon loss in marshes of the Florida Everglades. Ecological Applications 28:2092-2108. https://doi.org/10.1002/eap.1798

51. *Wilson, B.J., S.M. Servais*, S.P. Charles*, S.E. Davis, E.E. Gaiser, J.S. Kominoski , J. Richards, T.G. Troxler. 2018. Declines in plant productivity drive carbon loss from brackish coastal wetland mesocosms exposed to saltwater intrusion. Estuaries and Coasts 41:2147-2158. https://doi.org/10.1007/s12237-018-0438-z

50. Kominoski, J.S., E.E. Gaiser, S.G. Baer. 2018. Advancing theories of ecosystem development through long-term ecological research. BioScience 68:554-562. https://doi.org/10.1093/biosci/biy070

49. Marazzi, L., C.M. Finlayson, P.A. Gell, P. Julian, J.S. Kominoski, and E.E. Gaiser. 2018. Balancing wetland restoration benefits to people and nature. The Solutions Journal, Volume 9, Issue 3. https://www.thesolutionsjournal.com/article/balancing-wetland-restoration-benefits-people-nature/

48. *Mazzei, V., E.E. Gaiser, J.S. Kominoski, B.J. Wilson*, S.M. Servais*, L. Bauman, S.E. Davis, S. Kelly, F. Sklar, D. Rudnick, J. Stachelek, T.G. Troxler. 2018. Functional and compositional responses of periphyton mats to simulated saltwater intrusion in the southern Everglades. Estuaries and Coasts 41:2105-2119. https://doi.org/10.1007/s12237-018-0415-6

47. Davis, S.E., R. Boucek, E. Castañeda-Moya, S. Dessu, E.E. Gaiser, J.S. Kominoski, J.P. Sah, D. Surratt, and T.G. Troxler. 2018. Episodic disturbances drive nutrient dynamics along freshwater-to-estuary gradients in a subtropical wetland. Ecosphere 9:e02296. https://doi.org/10.1002/ecs2.2296

46.  *Song, C., W.K. Dodds, J. Ruegg, A. Argerich, C.L. Baker*, W.B. Bowden, M.M. Douglas, K.J. Farrell*, M.B. Flinn, E.A. Garcia, A.M. Helton, T.K. Harms, S. Jia, J.B. Jones, L.E. Koenig*, J.S. Kominoski, W.H. McDowell, D. McMaster, S.P. Parker*, A.D. Rosemond, C.M. Rung, K.R. Sheehan, M.T. Trentman*, M.R. Whiles, W.M. Wollheim, F. Ballantyne. 2018. Continental-scale decrease in net primary productivity in streams due to climate warming. Nature Geoscience 11:415-420. https://www.nature.com/articles/s41561-018-0125-5

45. *Farrell, K.J., A.D. Rosemond, J.S. Kominoski, S.M. Bonjour*, J. Rüegg, L.E. Koenig*, C.L. Baker*, M.T. Trentman*, and T.K. Harms. 2018. Variation in detrital resource stoichiometry signals differential carbon to nutrient limitation for stream consumers across biomes. Ecosystems 21:1676-1691. https://doi.org/10.1007/s10021-018-0247-z

44. McPhillips, L. E., H. Chang, M. V. Chester, Y. Depietri, E. Friedman, N. B. Grimm, J. S. Kominoski, T. McPhearson, P. Méndez-Lázaro, E. J. Rosi, and J. Shafiei Shiva. 2018. Defining extreme events: a cross-disciplinary review. Earth’s Future 6:441-455. https://doi.org/10.1002/2017EF000686 

43. *Sola, A., L. Marazzi, M.M. Flores, J.S. Kominoski, and E.E. Gaiser. 2018. Effects of drying and rewetting on benthic microbial mat stoichiometry. Water 10:105. DOI:10.3390/w10020105

42. Dessu, S.B., R.M. Price, T.G. Troxler, J.S. Kominoski. 2018. Effects of sea-level rise and freshwater management on long-term water levels and water quality in the Florida Coastal Everglades. Journal of Environmental Management 211:164-176. https://doi.org/10.1016/j.jenvman.2018.01.025

41. Kominoski, J.S., A. Ruhí, M.M. Hagler, K. Petersen*, J.L. Sabo, T. Sinha, S. Arumugam, J. Olden. 2018. Patterns and drivers of fish extirpations in rivers of the American Southwest and Southeast. Global Change Biology 24:1175-1185. https://doi.org/10.1111/gcb.13940

40. Kominoski, J.S., A.D. Rosemond, J.P. Benstead, V. Gulis, D.W.P. Manning*. 2018. Experimental nitrogen and phosphorus additions increase rates of stream ecosystem respiration and carbon loss. Limnology and Oceanography 63:22-36.  https://doi.org/10.1002/lno.10610

39. *Manning, D.W.P., A.D. Rosemond, J.P. Benstead, V. Gulis, and J.S. Kominoski. 2018. Nutrients and temperature additively increase stream microbial respiration. Global Change Biology 24:e233-e247. https://doi.org/10.1111/gcb.13906

38. Welti, N., M. Striebel, A.J. Ulseth, W.F. Cross, S. DeVilbiss, P.M. Glibert, L. Guo, A.G. Hirst, J. Hood, J.S. Kominoski, K.L. MacNeill, A.S. Mehring, J.R. Welter, H. Hillebrand. 2017. Bridging food webs, ecosystem metabolism, and biogeochemistry using ecological stoichiometry theory. Frontiers in Microbiology 8:1298. https://doi.org/10.3389/fmicb.2017.01298

37. Martínez, A., J.S. Kominoski, A. Larrañaga. 2017. Leaf-litter leachate concentration promotes heterotrophy in freshwater biofilms: understanding consequences of water scarcity. Science of the Total Environment 599-600:1677-1684. https://doi.org/10.1016/j.scitotenv.2017.05.043

36. Arumugam, S., J.L. Sabo, K.L. Larson, S.B. Seo*, T. Sinha, R. Bhowmik*, A. Ruhi Vidal, K. Kunkel, G. Mahinthakumar, E.Z. Berglund, J.S. Kominoski. 2017. Synthesis of public water supply use in the U.S.: spatio-temporal patterns and socio-economic control. Earth’s Future 5:771-788. https://doi.org/10.1002/2016EF000511

35. Follstad Shah, J., J.S. Kominoski, M. Ardon, W. Dodds, M. Gessner, N. Griffiths, C. Hawkins, A. Lecerf, C. LeRoy, D. Manning*, S. Johnson, A. Rosemond, R. Sinsabaugh, C. Swan, J. Webster, and L. Zeglin. 2017. Global synthesis of the temperature sensitivity of leaf litter breakdown in streams and rivers. Global Change Biology 23:3064-3075. https://doi.org/10.1111/gcb.13609

34. Guo, H., C. Weaver*, S. Charles*, A. Whitt*, S. Dastidar*, P. D’Odorico, J.D. Fuentes, J.S. Kominoski, A.R. Armitage, and S.C. Pennings. 2017. Coastal regime shifts: Rapid responses of coastal wetlands to changes in mangrove cover. Ecology 98:762–772. https://doi.org/10.1002/ecy.1698

33. *Manning, D.W.P., A.D. Rosemond, V. Gulis, J.P. Benstead, J.S. Kominoski, and J.C. Maerz. 2016. Convergence of detrital stoichiometry predicts thresholds of nutrient-stimulated breakdown in streams. Ecological Applications 26:1745-1757. https://doi.org/10.1890/15-1217.1

32. Rüegg, J., W. Dodds, M. Daniels, K. Sheehan, C. Baker*, W. Bowden, K. Farrell*, M. Flinn, T. Harms, J. Jones, L. Koenig*, J.S. Kominoski, W. McDowell, S. Parker*, A. Rosemond, M. Trentman*, M. Whiles, and W. Wollheim. 2016. Baseflow physical characteristics differ at multiple spatial scales in stream networks across diverse biomes. Landscape Ecology 31:119-136. https://doi.org/10.1007/s10980-015-0289-y

31. Rosemond, A.D., J.P. Benstead, P.M. Bumpers*, V. Gulis, J.S. Kominoski, D.W.P. Manning*, K. Suberkropp, J.B. Wallace. 2015. Experimental nutrient additions accelerate terrestrial carbon loss from stream ecosystems. Science 347:1142-1145. http://science.sciencemag.org/content/347/6226/1142   F100Prime Recommended

30. *Manning, D.W.P., A.D. Rosemond, J.S. Kominoski, V. Gulis, J.P. Benstead, J.C. Maerz. 2015. Detrital stoichiometry as a critical nexus for the effects of streamwater nutrients on leaf litter breakdown rates. Ecology 96:2214-2224. http://dx.doi.org/10.1890/14-1582.1

29. Kominoski, J.S., A.D. Rosemond, J.P. Benstead, V. Gulis, J.C. Maerz, D.W.P. Manning*. 2015. Low-to-moderate nitrogen and phosphorus concentrations accelerate microbially driven litter breakdown rates. Ecological Applications 25:156-165. http://dx.doi.org/10.1890/14-1113.1

28. Trexler, J.C., E.E. Gaiser, J.S. Kominoski, J.L. Sanchez*. 2014. The role of periphyton mats in consumer community structure and function in calcareous wetlands: lessons from the Everglades. In Entry, J., K. Jayachandran, A.D. Gottlieb, A. Ogram (eds.) Microbiology of the Everglades Ecosystem. Science Publishers, Boca Raton, Florida.

27. *Lovatt, C., J.S. Kominoski, T. Sakamaki, B. Macleod*, J.S. Richardson. 2014. Leaf-litter leachate and light interactively enhance accrual of stream biofilms. Fundamental and Applied Limnology 184:297-306. http://dx.doi.org/10.1127/1863-9135/2014/0602

26. Heffernan, J.B., P.A. Soranno, M.J. Angilletta Jr, L.B. Buckley, D.S. Gruner, T.H. Keitt, J.R. Kellner, J.S. Kominoski, A.V. Rocha, J. Xiao, T.K. Harms, S.J. Goring, L.E. Koenig*, W.H. McDowell, H. Powell, A.D. Richardson, C.A. Stow, R. Vargas, and K.C. Weathers. 2014. Macrosystems ecology: understanding ecological patterns and processes at continental scales. Frontiers in Ecology and the Environment 12: 5–14. http://dx.doi.org/10.1890/130017

25. Goring, S.J., K.C. Weathers, W.K. Dodds, P.A. Soranno, L.C. Sweet, K.S. Cheruvelil, J.S. Kominoski, J. Rüegg, A.M. Thorn, and R.M. Utz. 2014. Improving the culture of interdisciplinary collaboration in ecology by expanding measures of success. Frontiers in Ecology and the Environment 12: 39–47. http://dx.doi.org/10.1890/120370

24. Troxler, T., E.E. Gaiser, J.G. Barr, J.D. Fuentes, R. Jaffe, D.L. Childers, L. Collado-Vides, V.H. Rivera-Monroy, E. Castaneda-Moya, W.T. Anderson, R.M. Chambers, M. Chen, C. Coronado-Molina, S.E. Davis, V. Engel, C. Fitz, J.W. Fourqurean, T.A. Frankovich, J.S. Kominoski, C.J. Madden, S.L. Malone, S. Oberbauer, P.C. Olivas, J.H. Richards, C.J. Saunders, J. Schedlbauer, L.J. Scinto, F.H. Sklar, T.J. Smith, J.M. Smoak, G. Starr, R.R. Twilley, K.R.T. Whelan 2013. Integrated carbon budget models for the Everglades terrestrial-coastal-oceanic gradient: current status and needs for inter-site comparisons. Oceanography 26:98-107. http://dx.doi.org/10.5670/oceanog.2013.51

23. Kominoski, J.S., J.J. Follstad Shah, C. Canhoto, D.G. Fischer, D. Giling*, E. González, N.A. Griffiths, A. Larrañaga, C.J. LeRoy, M.M. Mineau, Y.R. McElarney, S.M. Shirley, C.M. Swan, S.D. Tiegs. 2013. Forecasting functional implications of global changes in riparian plant communities. Frontiers in Ecology and the Environment 11:423-432. http://dx.doi.org/10.1890/120056

22. Prather, C.M., S. Pelini, A.N. Laws, E. Rivest, M. Woltz, C.P. Bloch, I. Del Torro, C-K. Ho, J.S. Kominoski, T.A.S. Newbold, S. Parsons. 2013. Invertebrates, ecosystem services and climate change. Biological Reviews 88:327-344. DOI: 10.1111/brv.12002

21. Swan, C.M and J.S. Kominoski. 2012. Biodiversity and Ecosystem Function of Decomposition. In: eLS 2012, John Wiley & Sons, Ltd: Chichester. http://www.els.net/WileyCDA/ElsArticle/refId-a0023601.html

20. Kominoski, J.S., S. Larrañaga, J.S. Richardson. 2012. Invertebrate feeding and emergence timing vary among streams along a gradient of riparian forest composition. Freshwater Biology 57: 759-772. DOI: 10.1111/j.1365-2427.2012.02740.x

Corrigendum: Invertebrate feeding and emergence timing vary among streams along a gradient of riparian forest composition. Freshwater Biology 57:759–772. DOI: 10.1111/j.1365-2427.2012.02740.x

19. Kominoski, J.S., A.D. Rosemond. 2012. Conservation from the ‘bottom up’: Forecasting effects of global change on dynamics of organic matter and management needs for river networks. Freshwater Science 31:51-68. http://www.jstor.org/stable/10.1899/10-160.1

18. Kominoski, J.S. 2011. Review: The Challenges of Biodiversity Science. The Quarterly Review of Biology, 86:133.

17. Lagrue, C., J.S. Kominoski, M. Danger, J.-M. Baudoin, S. Lamothe, D. Lambrigot, A. Lecerf. 2011. Experimental shading alters leaf litter breakdown in streams of contrasting riparian canopy cover. Freshwater Biology 56:2059-2069.  DOI: 10.1111/j.1365-2427.2011.02637.x

16. *Bretherton, W.D., J.S. Kominoski, C.J. LeRoy, D.G. Fischer. 2011. Salmon carcasses alter leaf litter species diversity effects on in-stream decomposition. Canadian Journal of Fisheries and Aquatic Sciences 68:1495-1506. DOI: 10.1139/f2011-082

15. Lecerf A., G. Marie, J.S. Kominoski, C. LeRoy, C. Bernardet, C.M. Swan. 2011. Incubation time, functional litter diversity, and ecosystem characteristics predict nonadditive litter mixing effects on decomposition. Ecology 92:160-169. http://dx.doi.org/10.1890/10-0315.1

14. Kominoski, J.S., L.B. Marczak, J.S. Richardson. 2011. Riparian forest composition affects stream litter decomposition despite similar microbial and invertebrate communities. Ecology 92:151-159. http://dx.doi.org/10.1890/10-0028.1

13. Sabo, J.S., T. Sinha, L.C. Bowling, G.H.W. Schoups, W.W. Wallender, M.E. Campana, K.A. Cherkauer, P. Fuller, W.L. Graf, J.W. Hopmans, J.S. Kominoski, C. Taylor, S.W. Trimble, R.H. Webb, E.E. Wohl. 2010. Reclaiming freshwater sustainability in the Cadillac Desert. Proceedings of the National Academy of Sciences, USA 107:21236-21269. doi: 10.1073/pnas.1009734108  

12. Ball, B.A., J.S. Kominoski, H.E. Adams, S.E. Jones, E.S. Kane, T.D. Loecke, W. Mahaney, J. Martina, C.M. Prather, T.M.P. Robinson, C.T. Solomon. 2010. Direct and terrestrial vegetation-mediated effects of environmental change on aquatic ecosystem processes. BioScience 60:590-601. https://doi.org/10.1525/bio.2010.60.8.5

11. Lecerf, A., J.S. Kominoski. 2010. Functional leaf traits and biodiversity effects on litter decomposition in a stream: Comment. Ecology 91:1867-1869. http://dx.doi.org/10.1890/0012-9658-91.6.1867

10. Rosemond, A.D., C.M. Swan, J.S. Kominoski, S.E. Dye. 2010. Non-additive effects of litter mixing are suppressed in a nutrient-enriched stream. Oikos 119:326-336. DOI: 10.1111/j.1600-0706.2009.17904.x

9. Gonzalez, A., J.S. Kominoski, M. Danger, S. Ishida, N. Iwai, A. Rubach. 2010. Can Ecological Stoichiometry explain patterns of biological invasions? Oikos 119:779-790. DOI: 10.1111/j.1600-0706.2009.18549.x

8. Kominoski, J.S., T.J. Hoellein, C.J. LeRoy, C.M. Pringle, C.M. Swan. 2010. Beyond species richness: expanding biodiversity-ecosystem functioning theory in detritus-based streams. River Research and Applications 26:67-75. DOI: 10.1002/rra.1285

7. Kominoski, J.S., C.M. Pringle. 2009. Resource-consumer diversity: testing effects of leaf litter species diversity on stream macroinvertebrate communities. Freshwater Biology 54:1461-1473. DOI: 10.1111/j.1365-2427.2009.02196.x

6. Kominoski, J.S., T.J. Hoellein, J.J. Kelly, C.M. Pringle. 2009. Does mixing litter of different qualities alter stream microbial diversity and functioning on individual litter species? Oikos 118:457-463. DOI: 10.1111/j.1600-0706.2008.17222.x

5. Ball, B.A., M.D. Hunter, J.S. Kominoski, C.M. Swan, M.A. Bradford. 2008. Consequences of non-random species loss on decomposition dynamics: Evidence for additive and non-additive effects. Journal of Ecology 96:303-313. DOI: 10.1111/j.1365-2745.2007.01346.x

4. Kominoski, J.S., C.M. Pringle, B.A. Ball. 2008. Invasive woolly adelgid appears to drive seasonal hemlock and carcass inputs to a detritus-based stream. Verhandlungen Internationale Vereinigung für theoretische und angewandte Limnologie 30:109-112. https://doi.org/10.1080/03680770.2008.11902095

3. Kominoski, J.S., B.J. Mattsson, B. Rashleigh, S.L. Eggert. 2007. Using long-term chemical and biological indicators to assess stream health in the Upper Oconee River watershed. Proceedings of the 2007 Georgia Water Resources Conference. http://hdl.handle.net/1853/47965

2. Kominoski, J.S., P.A. Moore, R.G. Wetzel, N.C. Tuchman. 2007. Elevated CO2 alters leaf-litter-derived dissolved organic carbon: effects on stream periphyton and crayfish feeding preference. Journal of the North American Benthological Society 26:662-671. http://dx.doi.org/10.1899/07-002.1

1. Kominoski, J.S., C.M. Pringle, B.A. Ball, M.A. Bradford, D.C. Coleman, D.B. Hall, M.D. Hunter. 2007. Nonadditive effects of leaf litter species diversity on breakdown dynamics in a detritus-based stream. Ecology 88:1167-1176. http://dx.doi.org/10.1890/06-0674

Works in Progress:

Kominoski, J.S., E. Castañeda-Moya, S.L. Malone. Comparing patterns and drivers of aquatic ecosystem metabolism in subtropical brackish and freshwater wetlands. In preparation for submission to Ecology.

*Farrell, K.J., A.D. Rosemond, J. Rüegg, and J.S. Kominoski. Spatial and temporal patterns in temperature, light, and organic matter drive metabolism and nutrient uptake throughout a forest headwater river network. In preparation.

Rüegg, J., K.B. Gido, K.J. Farrell*, M.B. Flinn, A. Argerich, E. Garcia, A.D. Rosemond, B. Penaluna, C. Song*, M.R. Whiles, C.L. Baker*, B. Bowden, M. Douglas, T.K. Harms, J.B. Jones, J.S. Kominoski, W.H. McDowell, D. McMaster, S.S. Parker*, M.T. Trentman*, W.M. Wollheim. Aquatic consumer biomass, richness, and trophic composition within headwater stream networks depends on relative stream size and biome. In preparation.

Ballantyne, F., C. Song*, M. Douglas, J. Jones, J.S. Kominoski, W. McDowell, D. McMaster, M. Trentman, and W. K. Dodds.  Inter-biome thermal performance of whole stream metabolism. In preparation.

Ogurcak, D., T.A. Crowl, M.S. Ross, J. Meeder, J.M. Smoak, J.S. Kominoski, J. Fourqurean, P. Gardinali, A. Chappel, N. Soares Quinete, J. Rivera*, M. Santos*, T. Barreto*. Sediment accumulation rates of organic matter, nutrients, and trace metals vary across mangrove forests on the island of Puerto Rico. In preparation for submission to Wetlands.

*Smith, M.A., J.S. Kominoski, E.E. Gaiser, N.B. Grimm, L. McPhillips, B. Rosenzweig, A. Ruhí, T.G. Troxler. The urban flood pulse concept: quantifying spatiotemporal variability in low- and high-flow patterns in urban versus non-urban streams and rivers. In preparation for submission to Water Resources Research.

Rosemond, A.D., and J.S. Kominoski. Insights from Experimental Approaches. In W.F. Cross, J.P. Benstead, A.M. Marcarelli, R.A. Sponseller (Eds). Foundations of Stream Ecology: Classic Papers with Commentaries. University of Chicago Press. In preparation.

*Smith, M.A., J.S. Kominoski, N.B. Grimm, J. Morse, O. Barbosa, E.E. Gaiser, T.G. Troxler, T. Williams. Quantifying the role of dissolved organic carbon and nutrient limitation on water-column and whole-system nutrient uptake in urban wetlands. In preparation for submission to Water Resources Research.

Song, C.*, W.K. Dodds, J. Rüegg, A. Argerich, C.L. Baker*, W.B. Bowden, M.M. Douglas, K.J. Farrell*, M.B. Flinn, E.A. Garcia, K.B. Gido, A.M. Helton, T.K. Harms, S. Jia, J.B. Jones, L.E. Koenig*, J.S. Kominoski, W.H. McDowell, D. McMaster, S.P. Parker*, A.D. Rosemond, C.M. Ruffing, K.R. Sheehan, M.T. Trentman*, M.R. Whiles, W.M. Wollheim, F. Ballantyne IV. Interaction between physiology and environmental heterogeneity determines discrepancies in stream metabolism across spatial scales. In preparation for submission to Ecology Letters.

*Wilson, B.J., T.G. Troxler, S.P. Charles*, S. Servais*, V. Mazzei*, S.E. Davis, E.E. Gaiser, J.S. Kominoski, J.H. Richards, D.T. Rudnick, F.H. Sklar. Saltwater intrusion and accelerate carbon loss in coastal peatlands: an experimental synthesis. In preparation for submission to Global Change Biology.

Lamb-Wotton*, L., K.L. Flowers*, K. Anderson*, J.M. Blair, S.G. Baer, J. Corman, M. Esch*, P. Flood* E.E. Gaiser, T.K. Harms, D. Kochan*, B.C. McMeans, Z. Ratajczak, J.S. Kominoski. Assessing spatial and temporal congruence of drivers and responses of abrupt and unexpected changes in ecosystems. In preparation for submission to BioScience.

*Charles, S.P., J.S. Kominoski, M.S. Ross, J. Sah, J.F. Meeder, L.J. Scinto. Soil organic carbon stocks decrease with saltwater intrusion despite mangrove encroachment in the Florida Coastal Everglades. In preparation for submission to Ecology.

Follstad Shah, J.J., J. Gallafent*, J.S. Kominoski, M. Ardón, A. Lecerf, M. Gessner. The activation energy of leaf litter breakdown does not vary amongst streams and rivers with different trophic status. In preparation for submission to Global Change Biology.